Lähdesmäki, Harri: search on Z-Library

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1

An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data

Cheng, Lu, Ramchandran, Siddharth, Vatanen, Tommi, Lietzén, Niina, Lahesmaa, Riitta, Vehtari, Aki, Lähdesmäki, Harri

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 777 KB

english, 2019

2

Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis

Xishan Hao, Baocun Sun, Limei Hu, Harri Lähdesmäki, Valerie Dunmire, Yumei Feng, Shi-Wu Zhang, Huamin Wang, Chunlei Wu, Hua Wang, Gregory N. Fuller, W. Fraser Symmans, Ilya Shmulevich, Wei Zhang

Journal:

Year:

2004

Language:

english

File:

PDF, 272 KB

english, 2004

3

Get some respect – buy organic foods! When everyday consumer choices serve as prosocial status signaling

Luomala, Harri, Puska, Petteri, Lähdesmäki, Merja, Siltaoja, Marjo, Kurki, Sami

Journal:

Year:

2020

Language:

english

File:

PDF, 1.41 MB

english, 2020

4

Learning the structure of dynamic Bayesian networks from

Harri Lähdesmäki, Ilya Shmulevich

Journal:

Machine Learning

Year:

2008

Language:

english

File:

PDF, 1.09 MB

english, 2008

5

An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation

Äijö, Tarmo, Edelman, Sanna M, Lönnberg, Tapio, Larjo, Antti, Kallionpää, Henna, Tuomela, Soile, Engström, Emilia, Lahesmaa, Riitta, Lähdesmäki, Harri

Journal:

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

6

Robust detection of periodic time series measured from biological systems

Miika Ahdesmäki, Harri Lähdesmäki, Ron Pearson, Heikki Huttunen, Olli Yli-Harja

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 402 KB

english, 2005

7

Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initiation of Human T helper 1 and T helper 2 Cell Polarization

Hawkins, R. David, Larjo, Antti, Tripathi, Subhash K., Wagner, Ulrich, Luu, Ying, Lönnberg, Tapio, Raghav, Sunil K., Lee, Leonard K., Lund, Riikka, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta

Journal:

Year:

2013

Language:

english

File:

PDF, 3.79 MB

english, 2013

8

A probabilistic generative model for quantification of DNA modifications enables analysis of demethylation pathways

Äijö, Tarmo, Huang, Yun, Mannerström, Henrik, Chavez, Lukas, Tsagaratou, Ageliki, Rao, Anjana, Lähdesmäki, Harri

Journal:

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

9

Mature Let-7 miRNAs fine tune expression of LIN28B in pluripotent human embryonic stem cells

Rahkonen, Nelly, Stubb, Aki, Malonzo, Maia, Edelman, Sanna, Emani, Maheswara Reddy, Närvä, Elisa, Lähdesmäki, Harri, Ruohola-Baker, Hannele, Lahesmaa, Riitta, Lund, Riikka

Journal:

Stem Cell Research

Year:

2016

Language:

english

File:

PDF, 777 KB

english, 2016

10

Inference of Boolean Networks Using Sensitivity Regularization

Liu, Wenbin, Lähdesmäki, Harri, Dougherty, Edward R., Shmulevich, Ilya

Journal:

EURASIP Journal on Bioinformatics and Systems Biology

Year:

2008

Language:

english

File:

PDF, 1.59 MB

english, 2008

11

Data-driven mechanistic analysis method to reveal dynamically evolving regulatory networks

Intosalmi, Jukka, Nousiainen, Kari, Ahlfors, Helena, Lähdesmäki, Harri

Journal:

Year:

2016

Language:

english

File:

PDF, 584 KB

english, 2016

12

Selected proceedings of Machine Learning in Systems Biology: MLSB 2016

van Dijk, Aalt D. J., Lähdesmäki, Harri, de Ridder, Dick, Rousu, Juho

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 212 KB

english, 2016

13

Quantitative proteomic characterization and comparison of T helper 17 and induced regulatory T cells

Mohammad, Imran, Nousiainen, Kari, Bhosale, Santosh D., Starskaia, Inna, Moulder, Robert, Rokka, Anne, Cheng, Fang, Mohanasundaram, Ponnuswamy, Eriksson, John E., Goodlett, David R., Lähdesmäki, Harri

Journal:

Year:

2018

Language:

english

File:

PDF, 6.86 MB

english, 2018

14

Cancer-associated ASXL1 mutations may act as gain-of-function mutations of the ASXL1–BAP1 complex

Balasubramani, Anand, Larjo, Antti, Bassein, Jed A., Chang, Xing, Hastie, Ryan B., Togher, Susan M., Lähdesmäki, Harri, Rao, Anjana

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 3.15 MB

english, 2015

15

Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data

Miika Ahdesmäki, Harri Lähdesmäki, Andrew Gracey, llya Shmulevich, Olli Yli-Harja

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 538 KB

english, 2007

16

A Data Integration Framework for Prediction of Transcription Factor Targets : A BCL6 Case Study

Matti Nykter, Harri Lähdesmäki, Alistair Rust, Vesteinn Thorsson, Ilya Shmulevich

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 375 KB

english, 2009

17

Control of Foxp3 stability through modulation of TET activity

Yue, Xiaojing, Trifari, Sara, Äijö, Tarmo, Tsagaratou, Ageliki, Pastor, William A., Zepeda-Martínez, Jorge A., Lio, Chan-Wang J., Li, Xiang, Huang, Yun, Vijayanand, Pandurangan, Lähdesmäki, Harri, Rao

Journal:

Journal of Experimental Medicine

Year:

2016

Language:

english

File:

PDF, 3.70 MB

english, 2016

18

MixChIP: a probabilistic method for cell type specific protein-DNA binding analysis

Rautio, Sini, Lähdesmäki, Harri

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.35 MB

english, 2015

19

An additive Gaussian process regression model for interpretable non-parametric analysis of longitudinal data

Cheng, Lu, Ramchandran, Siddharth, Vatanen, Tommi, Lietzén, Niina, Lahesmaa, Riitta, Vehtari, Aki, Lähdesmäki, Harri

Journal:

Nature Communications

Year:

2019

File:

PDF, 777 KB

2019

20

The genome-wide landscape of copy number variations in the MUSGEN study provides evidence for a founder effect in the isolated Finnish population

Kanduri, Chakravarthi, Ukkola-Vuoti, Liisa, Oikkonen, Jaana, Buck, Gemma, Blancher, Christine, Raijas, Pirre, Karma, Kai, Lähdesmäki, Harri, Järvelä, Irma

Journal:

European Journal of Human Genetics

Year:

2013

Language:

english

File:

PDF, 293 KB

english, 2013

21

snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions

Nousiainen, Kari, Kanduri, Kartiek, Ricaño-Ponce, Isis, Wijmenga, Cisca, Lahesmaa, Riitta, Kumar, Vinod, Lähdesmäki, Harri

Journal:

Year:

2018

Language:

english

File:

PDF, 193 KB

english, 2018

22

Empowered by stigma? Pioneer organic farmers’ stigma management strategies

Lähdesmäki, Merja, Siltaoja, Marjo, Luomala, Harri, Puska, Petteri, Kurki, Sami

Journal:

Journal of Rural Studies

Year:

2018

Language:

english

File:

PDF, 511 KB

english, 2018

23

In silicomicrodissection of microarray data from heterogeneous cell populations

Harri Lähdesmäki, llya Shmulevich, Valerie Dunmire, Olli Yli-Harja, Wei Zhang

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 356 KB

english, 2005

24

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX

Ko, Myunggon, An, Jungeun, Bandukwala, Hozefa S., Chavez, Lukas, Äijö, Tarmo, Pastor, William A., Segal, Matthew F., Li, Huiming, Koh, Kian Peng, Lähdesmäki, Harri, Hogan, Patrick G., Aravind, L., Rao

Journal:

Year:

2013

Language:

english

File:

PDF, 920 KB

english, 2013

25

The effect of music performance on the transcriptome of professional musicians

Kanduri, Chakravarthi, Kuusi, Tuire, Ahvenainen, Minna, Philips, Anju K., Lähdesmäki, Harri, Järvelä, Irma

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 535 KB

english, 2015

26

Tubulin- and actin-associating GIMAP4 is required for IFN-γ secretion during Th cell differentiation

Heinonen, Mirkka T, Kanduri, Kartiek, Lähdesmäki, Harri J, Lahesmaa, Riitta, Henttinen, Tiina A

Journal:

Immunology & Cell Biology

Year:

2015

Language:

english

File:

PDF, 2.27 MB

english, 2015

27

Evaluating a lineark-mer model for protein-DNA interactions using high-throughput SELEX data

Juhani Kähärä,Harri Lähdesmäki

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

28

Novel Data Fusion Method and Exploration of Multiple Information Sources for Transcription Factor Target Gene Prediction

Dai, Xiaofeng, Yli-Harja, Olli, Lähdesmäki, Harri

Journal:

EURASIP Journal on Advances in Signal Processing (Hindawi Publishing Corporation)

Year:

2010

Language:

english

File:

PDF, 2.55 MB

english, 2010

29

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data

Intosalmi, Jukka, Ahlfors, Helena, Rautio, Sini, Mannerstöm, Henrik, Chen, Zhi Jane, Lahesmaa, Riitta, Stockinger, Brigitta, Lähdesmäki, Harri

Journal:

BMC Systems Biology

Year:

2015

Language:

english

File:

PDF, 857 KB

english, 2015

30

[IEEE 2008 International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies (BIOTECHNO) - Bucharest, Romania (2008.06.29-2008.07.5)] 2008 International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies - sBGMM: A Stratified Beta-Gaussian Mixture Model for Clustering Genes with Multiple Data Sources

Dai, Xiaofeng, Lähdesmäki, Harri, Yli-Harja, Olli

Year:

2008

Language:

english

File:

PDF, 316 KB

english, 2008

31

Estimation and inversion of the effects of cell population asynchrony in gene expression time-series

Harri Lähdesmäki, Heikki Huttunen, Tommi Aho, Marja-Leena Linne, Jari Niemi, Juha Kesseli, Ron Pearson, Olli Yli-Harja

Journal:

Signal Processing

Year:

2003

Language:

english

File:

PDF, 467 KB

english, 2003

32

Quantitative proteomics analysis of signalosome dynamics in primary T cells identifies the surface receptor CD6 as a Lat adaptor–independent TCR signaling hub

Roncagalli, Romain, Hauri, Simon, Fiore, Fréderic, Liang, Yinming, Chen, Zhi, Sansoni, Amandine, Kanduri, Kartiek, Joly, Rachel, Malzac, Aurélie, Lähdesmäki, Harri, Lahesmaa, Riitta, Yamasaki, Sho, Sa

Journal:

Nature Immunology

Year:

2014

Language:

english

File:

PDF, 1.49 MB

english, 2014

33

Male-Male Status Signaling through Favoring Organic Foods: Is the Signaler Perceived and Treated as a Friend or a Foe?

Puska, Petteri, Kurki, Sami, Lähdesmäki, Merja, Siltaoja, Marjo, Luomala, Harri

Journal:

Psychology and Marketing

Year:

2016

Language:

english

File:

PDF, 516 KB

english, 2016

34

Genome-Wide Copy Number Variation Analysis in Extended Families and Unrelated Individuals Characterized for Musical Aptitude and Creativity in Music

Ukkola-Vuoti, Liisa, Kanduri, Chakravarthi, Oikkonen, Jaana, Buck, Gemma, Blancher, Christine, Raijas, Pirre, Karma, Kai, Lähdesmäki, Harri, Järvelä, Irma, Dewan, Andrew

Journal:

Year:

2013

Language:

english

File:

PDF, 363 KB

english, 2013

35

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

Kostic, Aleksandar D., Gevers, Dirk, Siljander, Heli, Vatanen, Tommi, Hyötyläinen, Tuulia, Hämäläinen, Anu-Maaria, Peet, Aleksandr, Tillmann, Vallo, Pöhö, Päivi, Mattila, Ismo, Lähdesmäki, Harri, Fran

Journal:

Cell Host & Microbe

Year:

2015

Language:

english

File:

PDF, 2.36 MB

english, 2015

36

The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

Kostic, Aleksandar D., Gevers, Dirk, Siljander, Heli, Vatanen, Tommi, Hyötyläinen, Tuulia, Hämäläinen, Anu-Maaria, Peet, Aleksandr, Tillmann, Vallo, Pöhö, Päivi, Mattila, Ismo, Lähdesmäki, Harri, Fran

Journal:

Cell Host & Microbe

Year:

2016

Language:

english

File:

PDF, 98 KB

english, 2016

37

A Novel Approach for Manual Segmentation of the Amygdala and Hippocampus in Neonate MRI

Hashempour, Niloofar, Tuulari, Jetro J., Merisaari, Harri, Lidauer, Kristian, Luukkonen, Iiris, Saunavaara, Jani, Parkkola, Riitta, Lähdesmäki, Tuire, Lehtola, Satu J., Keskinen, Maria, Lewis, John D.

Journal:

Frontiers in Neuroscience

Year:

2019

Language:

english

File:

PDF, 6.10 MB

english, 2019

38

A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data

Xiaofeng Dai, Timo Erkkilä, Olli Yli-Harja, Harri Lähdesmäki

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 506 KB

english, 2009

39

Cancer-associated ASXL1 mutations may act as gain-of-function mutations of the ASXL1–BAP1 complex

Balasubramani, Anand, Larjo, Antti, Bassein, Jed A., Chang, Xing, Hastie, Ryan B., Togher, Susan M., Lähdesmäki, Harri, Rao, Anjana

Journal:

Nature Communications

Year:

2015

File:

PDF, 3.15 MB

2015

40

Bayesian metabolic flux analysis reveals intracellular flux couplings

Heinonen, Markus, Osmala, Maria, Mannerström, Henrik, Wallenius, Janne, Kaski, Samuel, Rousu, Juho, Lähdesmäki, Harri

Journal:

Year:

2019

Language:

english

File:

PDF, 781 KB

english, 2019

41

From Shame to Fame: A Model of the Destigmatization Process in Media Discourse

Siltaoja, Marjo Elisa, Lahdesmaki, Merja, Puska, Petteri, Kurki, Sami, Luomala, Harri

Journal:

Academy of Management Proceedings

Year:

2015

Language:

english

File:

PDF, 123 KB

english, 2015

42

Chemical castration and anti-androgens induce differential gene expression in prostate cancer

Saara Lehmusvaara, Timo Erkkilä, Alfonso Urbanucci, Kati Waltering, Janne Seppälä, Antti Larjo, Vilppu J Tuominen, Jorma Isola, Paula Kujala, Harri Lähdesmäki, Antti Kaipia, Teuvo LJ Tammela, Tapio Vi

Journal:

The Journal of Pathology

Year:

2012

Language:

english

File:

PDF, 1.94 MB

english, 2012

43

Identification of global regulators of T-helper cell lineage specification

Kanduri, Kartiek, Tripathi, Subhash, Larjo, Antti, Mannerström, Henrik, Ullah, Ubaid, Lund, Riikka, Hawkins, R. David, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

44

LuxGLM: a probabilistic covariate model for quantification of DNA methylation modifications with complex experimental designs

Äijö, Tarmo, Yue, Xiaojing, Rao, Anjana, Lähdesmäki, Harri

Journal:

Year:

2016

Language:

english

File:

PDF, 616 KB

english, 2016

45

Prenatal exposures and infant brain: Review of magnetic resonance imaging studies and a population description analysis

Pulli, Elmo P., Kumpulainen, Venla, Kasurinen, Jussi H., Korja, Riikka, Merisaari, Harri, Karlsson, Linnea, Parkkola, Riitta, Saunavaara, Jani, Lähdesmäki, Tuire, Scheinin, Noora M., Karlsson, Hasse,

Journal:

Human Brain Mapping

Year:

2018

Language:

english

File:

PDF, 982 KB

english, 2018

46

[IEEE 2007 IEEE International Workshop on Genomic Signal Processing and Statistics - Tuusula, Finland (2007.06.10-2007.06.12)] 2007 IEEE International Workshop on Genomic Signal Processing and Statistics - Robust Fisher's Test for Periodicity Detection in Noisy Biological Time Series

Ahdesmaki, Miika, Lahdesmaki, Harri, Yli-Harja, Olli

Year:

2007

Language:

english

File:

PDF, 263 KB

english, 2007

47

Reconstruction and Validation of RefRec: A Global Model for the Yeast Molecular Interaction Network

Aho, Tommi, Almusa, Henrikki, Matilainen, Jukka, Larjo, Antti, Ruusuvuori, Pekka, Aho, Kaisa-Leena, Wilhelm, Thomas, Lähdesmäki, Harri, Beyer, Andreas, Harju, Manu, Chowdhury, Sharif, Leinonen, Kalle,

Journal:

Year:

2010

Language:

english

File:

PDF, 839 KB

english, 2010

48

Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks

Harri Lähdesmäki, Sampsa Hautaniemi, Ilya Shmulevich, Olli Yli-Harja

Journal:

Signal Processing

Year:

2006

Language:

english

File:

PDF, 424 KB

english, 2006

49

Genome-wide Profiling of Interleukin-4 and STAT6 Transcription Factor Regulation of Human Th2 Cell Programming

Laura L. Elo, Henna Järvenpää, Soile Tuomela, Sunil Raghav, Helena Ahlfors, Kirsti Laurila, Bhawna Gupta, Riikka J. Lund, Johanna Tahvanainen, R. David Hawkins, Matej Orešič, Harri Lähdesmäki, Omid Ra

Journal:

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

50

[IEEE 2013 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS) - Houston, TX, USA (2013.11.17-2013.11.19)] 2013 IEEE International Workshop on Genomic Signal Processing and Statistics - Active learning for Bayesian network models of biological networks using structure priors

Larjo, Antti, Lahdesmaki, Harri

Year:

2013

Language:

english

File:

PDF, 273 KB

english, 2013

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